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Vegan Zucchini Muffins

June 1, 2020 by Ginger Hultin MS RDN

Vegetables in muffins? Of course! While most of us are familiar with fruits like bananas or apples taking center stage in muffin recipes, vegetables like zucchini and carrot can be a flavorful, nutritious addition as well. The thing I love about muffins is that you can have them any time of day. Most of us think about muffins as a breakfast food but they also make really great snacks or desserts as well. This recipe provides the perfect quick, tasty, and nutritious snack for my on-the-go clients who work hard for long hours, or for kids and teens on the go- busy with activities and schoolwork. I personally enjoy them as a pre- or post-workout snack, so I just had to share this new recipe for Vegan zucchini muffins with you today.

Zucchini muffins in a 12-tin with brightly colored liners

Why zucchini?

Summer squash is a really amazing food. One thing I love to do with this hearty veggie is make zoodles out of it (zucchini noodles rather). This Simple Garlic Lemon Zoodles recipe is my all-time most popular on the blog and on Pinterest (follow me here so we’re connected!). I’ve also got a zoodles with tofu and peanut sauce up on the blog which combines three of my favorites: a simple baked tofu recipe, zoodles and an easy-to-make peanut sauce that you’ll want to put on everything.

Summer squash like zucchini is really fun in recipes and I can’t wait to tell you about all the things you can do with healthy anytime zucchini muffins, but first I want to talk about the nutritional benefits in them. Zucchinis are really high in minerals like copper, manganese, phosphorus and magnesium. They’re also high in vitamins like vitamin C, B1, B3 and B6, folate, and vitamin K. They’re rich in fiber and they’ve got a nice, subtle flavor that goes well with other ingredients in recipes. Unlike stronger flavored vegetables like broccoli or cauliflower or even bell peppers, zucchini works well in both savory and sweet recipes.

Healthy vegan zucchini muffins

Making these muffins is actually really easy. I recommend that you make a batch of muffins every week, as part of your prep. These aren’t muffins like those gigantic ones from Costco that are actually four servings in one muffin and are basically cake. These are more dense little nutritionally-packed muffins that are a totally appropriate way to start your day or enjoy before a workout as balanced fuel. They have a lot of complex carbs but are balanced with some protein, and healthy fat. I actually list the serving as “two” of them because they’re quite light in calories and small in size.

Once you get the oven warming and your muffin tins are ready to go (I’ve got my colorful silicone liners here in this one), then you need to grab two bowls – a large one to mix all the dry ingredients and a medium one to mix all the wet ingredients.

Dry ingredients

Whole wheat flour always makes a more dense product so if you’re not into it, you can absolutely use all all-purpose flour. Alternatively, you could use a gluten-free all-purpose flour if you want to avoid gluten. I love adding in oats so just make sure to use the whole, rolled oats instead of the more dense steel-cut or more wimpy instant kind.

A teaspoon of cinnamon is about perfect for this recipe. If it seems too strong for you, feel free to cut it back to 1/2 or 3/4 teaspoon. You could also get creative and add in some clove, nutmeg or ginger as well. When you add these spices in, you just add more flavor and antioxidants, so it’s a really fun thing to experiment with.

Wet ingredients

Mix the eggs*, maple syrup, milk and oil together in a separate bowl. You’ve got lots of options here! Use honey or agave instead of maple syrup if you’d like. I call for soy milk because it’s a higher protein plant-based milk but you can use absolutely any milk you want. Dairy milk is great as is almond or oat milk in a recipe like this. You’ve got options for oil as well. I suggest a neutral flavored oil that is good for baking such as canola, grapeseed, or avocado. You could sub melted butter or coconut oil if you want here.

*How to make a flax egg:

Mix 1 Tablespoon ground flaxseed with 3 Tablespoons of warm water, let sit until it thickens. This equals one egg in a baking recipe. So easy!


Finally, the zucchini – the star of the show in these vegan zucchini muffins – has a few considerations. I used two smallish sized veggies. You could use just one large zucchini if that’s what you have. What you’re aiming for is about 1 1/2-2 cups of shredded zucchini. Once it’s shredded, it’s quite wet so you want to take some paper towels and pat it dry so that the muffins aren’t too moist. It’s really fun because the shredded zucchini also creates a great texture and fun color in the muffins. It’s so mild-flavored, you won’t even notice it’s a veggie in your muffins!

I’ve got other healthy muffin recipes up on the blog if you need more ideas. These cranberry zucchini morning muffins are so delicious. I’ve got gluten-free pumpkin chocolate chip muffins and high protein honey-nut yogurt muffins as well.

If you try these ones, make sure to rate the recipe and let me know how they turn out!

Zucchini muffins in a 12-tin with brightly colored liners

Vegan Zucchini Muffins

These beautiful muffins contain so many nutrients and they taste delicious!
4 from 18 votes
Print Pin Rate
Course: Breakfast, Snack
Cuisine: Americana
Keyword: healthy breakfast, muffins, zucchini
Prep Time: 10 minutes
Cook Time: 20 minutes
Servings: 6
Calories: 278kcal


  • 3/4 cup whole wheat flour
  • 1 cup all-purpose flour
  • 1/2 cup rolled oats
  • 1 teaspoon baking powder
  • 1 teaspoon baking soda
  • 1 teaspoon cinnamon
  • 1 teaspoon salt
  • 2 eggs *or two 'flax eggs' if making a vegan version
  • 1/2 cup maple syrup
  • 1/2 cup soy milk can also use dairy, oat or almond milk
  • 1/2 cup vegetable oil try grapeseed, canola or avocado
  • 1 teaspoon vanilla extract
  • 2 small fresh zucchinis grated and pressed gently with paper towels to remove moisture


  • Heat the oven to 375°F and line a 12-cup muffin tin with paper or silicone liners. (Silicone liners preferred). Alternatively, grease the muffin tins.
  • In a large mixing bowl, whisk together the wholewheat flour, all-purpose flour, oats, baking powder, baking soda, cinnamon, and salt. In a separate medium mixing bowl, whisk together the eggs, maple syrup, milk, oil, and vanilla extract. Pour the wet mixture into the dry mixture and stir with a wooden spoon to combine. Gently fold in the zucchini, until just incorporated.
  • Divide the batter evenly between the muffin tins and bake for 18-20 minutes, or until muffin tops are firm to the touch.


Serving: 1muffin | Calories: 278kcal | Carbohydrates: 45g | Protein: 8g | Fat: 19g | Fiber: 2.8g
Tried this recipe?Mention @champagnenutrition


  1. FitGAG on March 31, 2023 at 5:49 am

    Hi Ginger, thank you for sharing this recipe for Healthy Anytime Zucchini Muffins! I’m always on the lookout for healthier snack options, and these muffins seem like the perfect choice.

    I’m curious, have you tried making these muffins with any alternative flour, such as almond flour or coconut flour? I try to avoid gluten in my diet, and I’m wondering if these muffins would still turn out well using a gluten-free flour alternative.

    Thank you for sharing this delicious recipe, Ginger! I look forward to trying it out and experimenting with some alternative flour options.

    • Ginger Hultin on April 20, 2023 at 9:34 am

      Hi there – oh yes, you definitely can. I actually use Bob’s Red Mill blend most of the time for gf but I think that almond could also create a nice texture

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Ginger Hultin,MS, RD, CSO

Integrative nutrition specialist helping clients navigate complex health conditions to reduce inflammation and feel better.

Thanks for visiting! If you're struggling with a cancer diagnosis, autoimmune condition, gut health problems, or even a medical mystery, nutrition can make a HUGE difference in your day-to-day life. I run a virtual, concierge private practice where I partner with my clients over time to help them improve their health through nutrition. Be sure to visit the blog for easy, plant-based, anti-inflammatory recipes and our "Resources" page for a variety of self-paced programs, books, e-books, and nutrition podcast episodes.

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